Abstract:Through constructing the integrated system, This paper analyzes the integration of research factor and the logic of self-organizing operation, using the theory of self- organization and slaving principle,in order to further improve the Related theory and form the theory framework of the system, In addition, Provides a new paradigm for scientific research management and technological innovation. In order to show the operation target of self-organizing system, this paper uses the degree of integration of research factor as the order parameter of the system, and constructing the order parameter from three dimensions of association, fusion and emergence. In the case of a state key laboratory, using the method of fuzzy comprehensive evaluation, verify the logic of self-organizing operation of the research factor integration system and the effectiveness of the integration degree.