Abstract:This paper uses the panel data from the year 2000-2012 of Chinese four big economic zones to analyzeSthe influence of development of modern service industrySon regional independent innovation enhancement systemly, The results illustrate that: Firstly, a long-term equilibrium relationship exists between the development of modern service industry and the independent innovation promotion; Secondly, the obtain employment of modern service industry has a Significant promote effects to enhance the capability of independent innovation, but the output level of modern service industry exists regional difference; Thirdly, analysisSaccordingStoSdifferentSstages shows thatSthe modern service industry to enhance the capability of independent innovation isSa dynamic processS;SSFinally, SAccording to the above analysis, some countermeasures and proposals are made up .