Abstract:The perspective of new institutionalism, constitute the basic elements of university scientific research development the system of the external environment, including university college within the formal system and university concept. Among them, the institutional environment is the cornerstone, the university idea is the soul, the formal system is the body. The institutional environment is fundamental, it decides and restricts the college within the system design, affects the formation of the concept of university. A formal system is a concrete manifestation of the institutional environment, but also the specific carrier of university concept. Good university idea once formed, it can offer spirit with the idea for the development of university research support, and promote the university to take all kinds of good formal system and informal constraints. This system has realized the new institutionalism said with ideological benign interaction. In a benign interaction in the ecological system of university scientific research development, a consistent as a concept, culture and the system of "academic freedom".