Abstract:Collaborative innovation places open, trust and share as preconditions to break the barriers between different organizations, and promote integration, flow and sharing of innovative resources to achieve the synergy of 1+1+1> 3. Since the high initial investment, long R&D cycle, easy plagiarism, difficult measurement of innovative results and other characteristics, it is not easy to carry out multi-body collaborative innovation. Therefore mechanisms for collaborative innovation based network organization are researched.Between universities, research institutions and enterprises as well as inside themselves could form network organizations, which means universities, research institutions and enterprises, as well as their functional units all have the ability to become active nodes of network organization. It is found that collaborative innovation mechanisms should be at least composed of five mechanisms: strategic synergy, contract synergy, resource synergy, benefit-sharing synergy, and continuous improvement synergy.