Abstract:Under certain collaborative innovation environment, the performance of collaborative research innovation is a unity. inputs and outputs parties. The paper has constructed the evaluation indicators to research on the input and output of collaborative innovation performance. Through factor analysis, it has been obtained that collaborative innovation performance indicators can be attributed to the three main co-factors, i.e. university and research units’ innovation, enterprise innovation and collaborative innovation degree. Using the contribution ratio of each factor / cumulative contribution rate, three factors determine the respective weights. Based on provincial data calculated for each 30 Chinese provinces, autonomous regions and municipalities of the total score and ranking factors. Further research through collaborative innovation performance evaluation results can be summarized obtain their current situation and problems of collaborative innovation, which puts forward the corresponding solutions, to enhance the overall performance of the national innovation system services.