Abstract:The allocation of scientific research funds and scientific personnel plays a leverage role in the dualistic output of academic research and transformation of scientific and technological achievements, and its scale and structure jointly affect the performance of dualistic outputs in colleges and universities. This paper constructs the data set of scientific research input and output of 64 colleges and universities affiliated to the Ministry of Education of China, and makes an empirical study on the efficiency relationship between the scientific research funds, human resources input and the output of academic papers, and the transformation of technological achievements in subordinate colleges and universities. The results show that, different sources of scientific research funds have different effects on the transformation of technological achievements. It is necessary to improve the mechanism of double output in universities from the aspects of carrying out classified management of universities, enhancing the mobility of scientific research personnel, widening the sources of funds input, and reforming the evaluation and incentive system.