Abstract:As a regional joint project of Nature Science Foundation, Union foundation have been attached more attention of goverment, which has high quality research by incite people cooperate from various area to realize Collaborative Innovation. Guangdong have surport Xinjiang on funds, personnal trainning and resource for a long period, which make great progress on Xinjiang area. Analysis on the innovation of united found, and the fundamental research deficiency of Kashgar, promote the new advertisement on cooperation and management different from others, which research on the necessity, feasibility and characteristic model, to promote the innovated development of fundamental research of Kashgar.