Abstract:For a long time, the legal system of innovation in science and technology takes the public law as the main construction, and the operation of scientific research institutions, the treatment of scientific research personnel and the development of scientific research activities are mainly guaranteed by administrative and government regulations. As a result, It makes the governance of scientific research institutions unitary and the insufficient academic autonomy of personnel, which is not conducive to the realization of legal function value of scientific and technological innovation. In order to solve the existing problems, it is an important way to affirm the legal status of government-affiliated scientific research organizations, clarify the civil contract nature of financial research project contracts, guarantee the right of scientific research personnel to transform their achievements into profits, and implement their basic income, based on the value orientation of scientific research freedom and scientific research autonomy.